Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DV143_RS11350 Genome accession   NZ_CP031333
Coordinates   1906157..1908199 (+) Length   680 a.a.
NCBI ID   WP_014581543.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1890369..1947747 1906157..1908199 within 0


Gene organization within MGE regions


Location: 1890369..1947747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS11265 - 1890883..1891089 (+) 207 WP_002220746.1 hypothetical protein -
  DV143_RS11270 - 1891113..1891448 (+) 336 WP_002261717.1 hypothetical protein -
  DV143_RS11275 - 1891483..1893579 (+) 2097 WP_002248022.1 peptidase domain-containing ABC transporter -
  DV143_RS11280 - 1893581..1894843 (+) 1263 WP_002214479.1 HlyD family efflux transporter periplasmic adaptor subunit -
  DV143_RS11285 - 1895113..1895952 (-) 840 WP_002214477.1 hypothetical protein -
  DV143_RS11290 - 1895993..1897000 (+) 1008 WP_115435291.1 IS5 family transposase -
  DV143_RS11300 - 1897252..1897896 (+) 645 Protein_1841 IS1595 family transposase -
  DV143_RS11305 dacB 1897943..1899352 (-) 1410 WP_002222967.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  DV143_RS11310 - 1899517..1900083 (+) 567 WP_002222966.1 NADPH-dependent FMN reductase -
  DV143_RS11320 - 1900653..1901966 (+) 1314 WP_002222940.1 CitMHS family transporter -
  DV143_RS11325 - 1902189..1902364 (+) 176 Protein_1845 response regulator -
  DV143_RS11330 - 1902360..1903610 (+) 1251 WP_002222939.1 ATP-binding protein -
  DV143_RS11335 rng 1903644..1905137 (-) 1494 WP_002214463.1 ribonuclease G -
  DV143_RS11340 grxC 1905350..1905607 (+) 258 WP_002221441.1 glutaredoxin 3 -
  DV143_RS11345 secB 1905628..1906071 (+) 444 WP_002214461.1 protein-export chaperone SecB -
  DV143_RS11350 recG 1906157..1908199 (+) 2043 WP_014581543.1 ATP-dependent DNA helicase RecG Machinery gene
  DV143_RS11365 argC 1909262..1910305 (-) 1044 WP_002222937.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DV143_RS11370 - 1910302..1910583 (-) 282 WP_002222936.1 hypothetical protein -
  DV143_RS14435 - 1910835..1911983 (+) 1149 Protein_1853 cupin domain-containing protein -
  DV143_RS14440 - 1911992..1912198 (+) 207 WP_002249064.1 hypothetical protein -
  DV143_RS11400 - 1912403..1912762 (+) 360 WP_002222933.1 hypothetical protein -
  DV143_RS14655 - 1913162..1913550 (+) 389 Protein_1856 hypothetical protein -
  DV143_RS11410 - 1913916..1914218 (+) 303 WP_002221436.1 hypothetical protein -
  DV143_RS11420 - 1914502..1914741 (+) 240 WP_002236088.1 cysteine peptidase family C39 domain-containing protein -
  DV143_RS11425 hrpB 1914802..1916544 (+) 1743 WP_115435292.1 two-partner secretion system transporter HrpB -
  DV143_RS11430 - 1916654..1922752 (+) 6099 WP_115435293.1 DUF637 domain-containing protein -
  DV143_RS11435 - 1922768..1923199 (+) 432 WP_002214437.1 hypothetical protein -
  DV143_RS11445 - 1923344..1926007 (+) 2664 WP_014580961.1 S-layer family protein -
  DV143_RS11450 - 1926014..1926523 (+) 510 WP_002219760.1 hypothetical protein -
  DV143_RS11455 - 1926592..1928271 (+) 1680 WP_002224017.1 S-layer family protein -
  DV143_RS11460 - 1928280..1928657 (+) 378 WP_002217880.1 hypothetical protein -
  DV143_RS11465 - 1928935..1929309 (+) 375 WP_002224016.1 hypothetical protein -
  DV143_RS11470 - 1929395..1931149 (+) 1755 WP_239995497.1 DUF637 domain-containing protein -
  DV143_RS11475 - 1931152..1932087 (+) 936 WP_061726307.1 immunity 49 family protein -
  DV143_RS11485 - 1932850..1933338 (+) 489 WP_061732599.1 hypothetical protein -
  DV143_RS11490 - 1933402..1934367 (-) 966 WP_002217985.1 IS30-like element IS1655 family transposase -
  DV143_RS11495 - 1934638..1934790 (-) 153 Protein_1871 transposase -
  DV143_RS11500 - 1934946..1942489 (+) 7544 Protein_1872 hemagglutinin repeat-containing protein -
  DV143_RS11505 - 1942493..1942909 (+) 417 WP_002224040.1 hypothetical protein -
  DV143_RS11510 - 1942936..1943991 (+) 1056 Protein_1874 hypothetical protein -
  DV143_RS11515 - 1943963..1944271 (+) 309 WP_002233812.1 hypothetical protein -
  DV143_RS11520 - 1944283..1944597 (+) 315 WP_002225624.1 hypothetical protein -
  DV143_RS11525 - 1944763..1945164 (+) 402 WP_014581538.1 toxin-activating lysine-acyltransferase -
  DV143_RS11530 - 1945232..1945983 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 74857.95 Da        Isoelectric Point: 7.8829

>NTDB_id=305944 DV143_RS11350 WP_014581543.1 1906157..1908199(+) (recG) [Neisseria meningitidis strain M18727]
MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHLPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTA
AALGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRL
ALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLI
EESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEE
DLHLLEQARETAPMLIEQNPEIVEAHLARWLSGREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=305944 DV143_RS11350 WP_014581543.1 1906157..1908199(+) (recG) [Neisseria meningitidis strain M18727]
ATGATGTCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTGTTGCACCTGCCGCTGCGTTACGAGGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATTG
GCGTGCCGTGCCAGGTCGAGGGCGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATC
GCCGACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGACGGCGGTCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGCTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCGGCGGTTTGGCGGAAAGCCTCACGCCGGTTTACCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGTATTATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTGTGCCGTCTGAAGCTGCCACACCTCGC
CGAAAGCCTGCGTCTTTTGCATTTGCCGCCGCCGAGTTTCACGATTCATCAGCTTTCAGACGGCACGCTGCCTGCATGGC
AACGGCTCAAATTCGATGAACTTTTGGCGCAACAGCTTTCGATGCGCTTGGCGCGACAGAAGCGTATCGGCGGCACGGCG
GCGGCATTGGGCGGCGACGGCACATTGACCCAAGCCCTGCGCCAAGCCCTGCCGTTTGCCCTGACCGATGCGCAAGAAAA
AGTTGTTTCCGAAATCTGCCGCGATATGGCGCAAACCTACCCGATGCACCGCCTGCTGCAGGGCGATGTCGGCAGCGGCA
AAACCATTGTGGCTGCTTTGTCTGCTTTGACGGCTATCGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCCACTGAAATC
CTTGCCGAACAGCATTTTATTAAATTTAAACAATGGCTCGAACCTTTGGGCATTGAAGTTGTCCGCCTTTTTGGCAGTTT
GCGTAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTGGCTGACGGCAGCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGGCGTGGCGTTTCACAATTTGGGCTTGACCATTGTGGACGAACAGCACCGTTTCGGCGTTGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGAAGTCCATCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTTGCGATGAGTTT
TTTCGCCGATTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACACCGATTAAAACGCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCGGCACTTGCCGAAAAGGGCGGCAGGCGTATTGGGTCTGCCCATTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCCGCCGAAACCCTCGCCCGGCTTCAGACGGCATTGCCCGAACTCAATAT
CGGACTGGTACACGGGCGCATGAAGGCCGCCGAAAAGGCCGAAGTGATGGCGCGGTTTTCTTCGGGGGGGCTGAACGTCT
TGGTCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAATGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTTCACCAATTACGCGGACGGGTAGGGCGCGGCGCGGCGGAAAGCGTGTGCGTCCTCCTGTTTGCCGA
ACCCTTGGGCGAACTCGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTGCCTATGCTGCGTTTCGCCAAGCTCGAAGAA
GACCTGCACCTCTTGGAACAAGCGCGCGAAACCGCCCCGATGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATTT
GGCAAGGTGGCTTTCCGGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(262-421)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

RecG wedge domain (RecG_wedge)

(15-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

99.706

100

0.997

Multiple sequence alignment