Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXE31_RS23940 Genome accession   NZ_CP035855
Coordinates   4934708..4935313 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli TW11681     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4929708..4940313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS26345 - 4930262..4930360 (+) 99 Protein_4705 hypothetical protein -
  EXE31_RS23910 rsmS 4930413..4930574 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXE31_RS23915 priC 4930588..4931115 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  EXE31_RS23920 ybaN 4931185..4931562 (+) 378 WP_001188905.1 DUF454 family protein -
  EXE31_RS23925 apt 4931715..4932266 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXE31_RS23930 dnaX 4932395..4934326 (+) 1932 WP_000122049.1 DNA polymerase III subunit gamma/tau -
  EXE31_RS23935 ybaB 4934379..4934708 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXE31_RS23940 recR 4934708..4935313 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305940 EXE31_RS23940 WP_001195025.1 4934708..4935313(+) (recR) [Escherichia coli TW11681]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305940 EXE31_RS23940 WP_001195025.1 4934708..4935313(+) (recR) [Escherichia coli TW11681]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCTGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment