Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXE31_RS22740 Genome accession   NZ_CP035855
Coordinates   4689892..4690368 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli TW11681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4684892..4695368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS22710 tnpB 4685043..4685390 (-) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  EXE31_RS22715 tnpA 4685390..4686067 (-) 678 WP_001339397.1 IS66-like element accessory protein TnpA -
  EXE31_RS22720 - 4686763..4687869 (+) 1107 WP_000633074.1 SMEK domain-containing protein -
  EXE31_RS22725 ykfI 4688964..4689305 (-) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  EXE31_RS22730 yafW 4689326..4689643 (-) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  EXE31_RS22735 - 4689662..4689883 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  EXE31_RS22740 radC 4689892..4690368 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  EXE31_RS22745 - 4690384..4690842 (-) 459 WP_000211838.1 antirestriction protein -
  EXE31_RS22750 ykfF 4690940..4691179 (-) 240 WP_000194654.1 DUF905 family protein -
  EXE31_RS22755 ykfB 4691256..4691723 (-) 468 WP_001385283.1 protein YkfB -
  EXE31_RS22760 yfjS 4691746..4692189 (-) 444 WP_000649865.1 YfjS/YafY family lipoprotein -
  EXE31_RS22765 ypjK 4692189..4692425 (-) 237 WP_001144031.1 protein YpjK -
  EXE31_RS22770 yfjR 4692466..4693167 (-) 702 WP_000189411.1 WYL domain-containing protein -
  EXE31_RS22775 - 4693384..4694197 (-) 814 Protein_4476 DUF932 domain-containing protein -
  EXE31_RS22780 - 4694289..4695152 (-) 864 WP_001065555.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=305933 EXE31_RS22740 WP_000811693.1 4689892..4690368(-) (radC) [Escherichia coli TW11681]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305933 EXE31_RS22740 WP_000811693.1 4689892..4690368(-) (radC) [Escherichia coli TW11681]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment