Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DV143_RS05570 Genome accession   NZ_CP031333
Coordinates   944829..948038 (-) Length   1069 a.a.
NCBI ID   WP_014581368.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 939829..953038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS05545 mtrC 940094..941332 (-) 1239 WP_002216627.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  DV143_RS05555 mtrR 941735..942367 (+) 633 Protein_908 multidrug efflux system transcriptional repressor MtrR -
  DV143_RS05560 - 942646..942858 (-) 213 WP_002235133.1 hypothetical protein -
  DV143_RS05565 mtrF 943191..944759 (+) 1569 WP_002218865.1 AbgT family antimetabolite efflux transporter MtrF -
  DV143_RS05570 recC 944829..948038 (-) 3210 WP_014581368.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DV143_RS05575 - 948139..949548 (-) 1410 WP_002235135.1 PepSY domain-containing protein -
  DV143_RS14325 - 949750..950055 (-) 306 Protein_913 cytochrome c5 family protein -
  DV143_RS14330 ccoP 950218..951081 (-) 864 Protein_914 cytochrome-c oxidase, cbb3-type subunit III -
  DV143_RS05590 - 951105..951275 (-) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  DV143_RS05595 ccoO 951280..951891 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120507.26 Da        Isoelectric Point: 4.9250

>NTDB_id=305922 DV143_RS05570 WP_014581368.1 944829..948038(-) (recC) [Neisseria meningitidis strain M18727]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVGTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRHFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQGVSAWYADVNQTALFGRFAAFLETLTDIVRIWRQPATIGEWVARCRGLLKTLFQAEADDQK
AVQNLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGNKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLARLLADTFAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=305922 DV143_RS05570 WP_014581368.1 944829..948038(-) (recC) [Neisseria meningitidis strain M18727]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCATTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTATCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGTGAAGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCAGATTACCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGCGGCTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGATGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATCTTCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGCGAAACGCCGGTAT
TTGAAGAAGGCGGACGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCGGTACGGATGACGGTTCGATACGTATCGTCTCCGCGCACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTACATGAACATCCCGATTGGCAGCCGCACGATATCGCCGTATTAACCCCGAATATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGATGTGAAA
ATCAGCCGCCGACAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTTGTGCTTTTAGAAACCGCGCCCGTGTTGCGCCATTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTCACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGGGGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGACGGATATTGTACGGATATGGCGGCAGC
CCGCAACGATCGGCGAATGGGTGGCGCGTTGCCGAGGTTTGCTTAAAACATTGTTCCAAGCCGAAGCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCC
GCACACCGTTATCCGCCACATCCGCCGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCCTTTAAAGTCATCTGTCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCTAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
CTTCCTCGAAGCCCTCATCAGCGCGCGTGAAATCCTGTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAAC
TGGCTCCGTCTTCTTTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGCCGCCAACTTGCACAA
AACTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAATCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAATCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAATCTACATCGAAGCACGGCGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAGACCTCGCTTGCCGCTGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ATTACGGCAACAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCA
CTCGAACAACCCCTGTTTGAAAACCTCGCCCGCCTGCTTGCCGACACGTTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-997)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.92

100

0.939

Multiple sequence alignment