Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV143_RS02535 Genome accession   NZ_CP031333
Coordinates   392135..393880 (-) Length   581 a.a.
NCBI ID   WP_115435237.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387135..398880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS02505 - 387359..387793 (+) 435 WP_002220974.1 hypothetical protein -
  DV143_RS02510 - 387852..388121 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  DV143_RS02515 lon 388303..390753 (-) 2451 WP_002227310.1 endopeptidase La -
  DV143_RS02530 - 391004..392107 (+) 1104 WP_002227308.1 class I SAM-dependent methyltransferase -
  DV143_RS02535 recD 392135..393880 (-) 1746 WP_115435237.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV143_RS02540 lolD 393947..394642 (-) 696 WP_002258219.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV143_RS02545 - 394635..395882 (-) 1248 WP_002258220.1 lipoprotein-releasing ABC transporter permease subunit -
  DV143_RS02550 - 396087..396365 (+) 279 WP_002213502.1 hypothetical protein -
  DV143_RS02555 recR 396421..397038 (-) 618 WP_002217147.1 recombination mediator RecR -
  DV143_RS02560 - 397105..398643 (-) 1539 WP_002227307.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63031.75 Da        Isoelectric Point: 6.1658

>NTDB_id=305914 DV143_RS02535 WP_115435237.1 392135..393880(-) (recD) [Neisseria meningitidis strain M18727]
MERQTDEFAQAAARAAIRFLERYAGSGSEVLANCTERLFQALQNGHSFIRLKKGEASFLSTLKPVVGESASPLILEGEKL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=305914 DV143_RS02535 WP_115435237.1 392135..393880(-) (recD) [Neisseria meningitidis strain M18727]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAGCGAAGTGCTTGCTAACTGTACCGAACGCCTGTTTCAGGCATTGCAGAACGGTCATTCGTTTATCCGTTTGAAAAAAG
GGGAGGCGTCCTTCCTTTCGACACTCAAGCCCGTAGTCGGGGAATCTGCCTCCCCTCTGATTTTGGAAGGGGAAAAACTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGTTTGGCGGCAGCCGGCACATCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTCGATGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTCGTCCTCGCGGCGTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCTGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.31

99.828

0.941

Multiple sequence alignment