Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV143_RS00590 Genome accession   NZ_CP031333
Coordinates   90245..90910 (+) Length   221 a.a.
NCBI ID   WP_061387506.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 85245..95910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS00545 - 85308..85640 (+) 333 WP_002226445.1 hypothetical protein -
  DV143_RS00550 - 85972..86481 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DV143_RS00575 - 87780..88367 (-) 588 WP_002222659.1 superoxide dismutase -
  DV143_RS00585 dnaB 88530..89936 (+) 1407 WP_002240464.1 replicative DNA helicase -
  DV143_RS00590 pilH 90245..90910 (+) 666 WP_061387506.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV143_RS00595 pilV 90940..91551 (+) 612 WP_061728270.1 type IV pilus modification protein PilV Machinery gene
  DV143_RS00600 pilJ 91548..92534 (+) 987 WP_115435229.1 PilW family protein Machinery gene
  DV143_RS00605 pilK 92513..93106 (+) 594 WP_061694264.1 pilus assembly protein Machinery gene
  DV143_RS00610 pilX 93111..93584 (+) 474 WP_194964625.1 PilX family type IV pilin Machinery gene
  DV143_RS00615 - 94570..95321 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24946.56 Da        Isoelectric Point: 9.8840

>NTDB_id=305909 DV143_RS00590 WP_061387506.1 90245..90910(+) (pilH) [Neisseria meningitidis strain M18727]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTAN
NKCDSGKKEQGMLAFGDKNGNKEYNDTADVLLRSVVLNDDINNKRINYAFNHIAFGHTQPTADRVVWTFNQNGTFGYTKD
RHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=305909 DV143_RS00590 WP_061387506.1 90245..90910(+) (pilH) [Neisseria meningitidis strain M18727]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGCCAAC
AATAAATGTGACTCCGGCAAGAAGGAGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGAATATAATGATAC
GGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTCACACGCAACCGACCGCCGACCGCGTTGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CGGCATCTTACAAAACAATCCAGCTTTTTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACGATA
GGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

82.353

100

0.824

Multiple sequence alignment