Detailed information NTG0305889

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXE31_RS12095
• Genome accession: NZ_CP035855
• Coordinates: 2475858..2476850 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli TW11681
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2470858..2481850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXE31_RS12070	ygbN	2471512..2472876 (+)	1365	WP_000104429.1	GntP family transporter	-
EXE31_RS12075	-	2472916..2473152 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EXE31_RS12080	-	2473163..2474590 (-)	1428	WP_000863215.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EXE31_RS12085	-	2474590..2475183 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EXE31_RS12090	-	2475330..2475737 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
EXE31_RS12095	rpoS	2475858..2476850 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXE31_RS12100	nlpD	2476913..2478007 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EXE31_RS12105	pcm	2478192..2478818 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXE31_RS12110	surE	2478812..2479573 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EXE31_RS12115	truD	2479554..2480603 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EXE31_RS12120	ispF	2480600..2481079 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXE31_RS12125	ispD	2481079..2481789 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305889 EXE31_RS12095 WP_000081550.1 2475858..2476850(-) (rpoS) [Escherichia coli TW11681]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305889 EXE31_RS12095 WP_000081550.1 2475858..2476850(-) (rpoS) [Escherichia coli TW11681]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715