Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXE31_RS08325 Genome accession   NZ_CP035855
Coordinates   1679079..1679555 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli TW11681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1674079..1684555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS08300 - 1674246..1676762 (+) 2517 WP_001474400.1 hypothetical protein -
  EXE31_RS08305 - 1676838..1677293 (+) 456 WP_000581504.1 IrmA family protein -
  EXE31_RS08310 - 1677372..1677605 (+) 234 WP_001119729.1 DUF905 family protein -
  EXE31_RS08315 - 1677705..1678523 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  EXE31_RS08320 - 1678578..1679063 (+) 486 WP_000849582.1 antirestriction protein -
  EXE31_RS08325 radC 1679079..1679555 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  EXE31_RS08330 yeeT 1679618..1679839 (+) 222 WP_000692318.1 DUF987 domain-containing protein -
  EXE31_RS08335 cbeA 1680002..1680370 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EXE31_RS08340 - 1680460..1680837 (+) 378 WP_000854752.1 TA system toxin CbtA family protein -
  EXE31_RS08345 - 1680834..1680983 (+) 150 Protein_1649 DUF5983 family protein -
  EXE31_RS08350 - 1681083..1681163 (+) 81 Protein_1650 hypothetical protein -
  EXE31_RS08355 - 1681961..1682350 (+) 390 WP_001445118.1 IS110 family transposase -
  EXE31_RS08360 - 1682509..1682988 (-) 480 Protein_1652 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305874 EXE31_RS08325 WP_001186774.1 1679079..1679555(+) (radC) [Escherichia coli TW11681]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305874 EXE31_RS08325 WP_001186774.1 1679079..1679555(+) (radC) [Escherichia coli TW11681]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399