Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV163_RS11205 Genome accession   NZ_CP031330
Coordinates   1893583..1894128 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain M21955     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1888583..1899128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS11175 - 1889589..1890101 (-) 513 WP_002219790.1 shikimate kinase -
  DV163_RS11200 pilQ 1891279..1893564 (-) 2286 WP_002219789.1 type IV pilus secretin PilQ Machinery gene
  DV163_RS11205 pilP 1893583..1894128 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  DV163_RS11210 - 1894146..1894793 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  DV163_RS11215 pilN 1894794..1895393 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  DV163_RS11220 - 1895396..1896511 (-) 1116 WP_002229867.1 type IV pilus biogenesis protein PilM -
  DV163_RS11225 - 1896663..1899059 (+) 2397 WP_002219786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=305852 DV163_RS11205 WP_002214522.1 1893583..1894128(-) (pilP) [Neisseria meningitidis strain M21955]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=305852 DV163_RS11205 WP_002214522.1 1893583..1894128(-) (pilP) [Neisseria meningitidis strain M21955]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1

Multiple sequence alignment