Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EXE32_RS21635 Genome accession   NZ_CP035850
Coordinates   4425232..4425861 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TW10590     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4420232..4430861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE32_RS21620 helD 4420474..4422528 (-) 2055 WP_126687845.1 DNA helicase IV -
  EXE32_RS21625 yccF 4422651..4423097 (+) 447 Protein_4241 YccF domain-containing protein -
  EXE32_RS21630 yccS 4423107..4425269 (+) 2163 WP_000875044.1 YccS family putative transporter -
  EXE32_RS21635 sxy/tfoX 4425232..4425861 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EXE32_RS21640 sulA 4426080..4426589 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EXE32_RS21645 ompA 4426946..4427986 (+) 1041 WP_000750416.1 porin OmpA -
  EXE32_RS21650 matP 4428062..4428514 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EXE32_RS21655 ycbZ 4428700..4430460 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=305849 EXE32_RS21635 WP_000839153.1 4425232..4425861(-) (sxy/tfoX) [Escherichia coli strain TW10590]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305849 EXE32_RS21635 WP_000839153.1 4425232..4425861(-) (sxy/tfoX) [Escherichia coli strain TW10590]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1