Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   DV163_RS04835 Genome accession   NZ_CP031330
Coordinates   804573..805571 (+) Length   332 a.a.
NCBI ID   WP_002214152.1    Uniprot ID   X5F838
Organism   Neisseria meningitidis strain M21955     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 799573..810571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS04800 - 799805..800494 (-) 690 WP_101093110.1 DNA glycosylase -
  DV163_RS04810 rsmA 800691..801470 (+) 780 WP_002234739.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV163_RS04815 - 801643..802371 (+) 729 WP_002219584.1 amino acid ABC transporter ATP-binding protein -
  DV163_RS04820 - 802444..802803 (+) 360 WP_002221265.1 hypothetical protein -
  DV163_RS04825 - 802808..803254 (+) 447 WP_115437297.1 protein YgfX -
  DV163_RS04830 folC 803286..804560 (+) 1275 WP_101093111.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV163_RS04835 tpc 804573..805571 (+) 999 WP_002214152.1 cell division protein FtsN Machinery gene
  DV163_RS04840 - 805564..806061 (+) 498 WP_002225491.1 CvpA family protein -
  DV163_RS04845 purF 806374..807918 (+) 1545 WP_002235594.1 amidophosphoribosyltransferase -
  DV163_RS04850 greB 808018..808509 (+) 492 WP_002235593.1 transcription elongation factor GreB -
  DV163_RS04855 - 808568..809194 (+) 627 WP_002234733.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35520.89 Da        Isoelectric Point: 10.1759

>NTDB_id=305830 DV163_RS04835 WP_002214152.1 804573..805571(+) (tpc) [Neisseria meningitidis strain M21955]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=305830 DV163_RS04835 WP_002214152.1 804573..805571(+) (tpc) [Neisseria meningitidis strain M21955]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAG

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5F838

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.884

100

0.937

Multiple sequence alignment