Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EXE32_RS11930 Genome accession   NZ_CP035850
Coordinates   2492141..2492878 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TW10590     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2487141..2497878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE32_RS11900 yfiL 2487299..2487664 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  EXE32_RS11905 aroF 2487874..2488944 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EXE32_RS11910 tyrA 2488955..2490076 (+) 1122 WP_126687950.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EXE32_RS11915 pheA 2490119..2491279 (-) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  EXE32_RS11920 pheL 2491378..2491425 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  EXE32_RS11925 raiA 2491529..2491870 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EXE32_RS11930 comL 2492141..2492878 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EXE32_RS11935 rluD 2493013..2493993 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EXE32_RS11940 yfiH 2493990..2494721 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  EXE32_RS11945 clpC 2494851..2497424 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=305826 EXE32_RS11930 WP_000197686.1 2492141..2492878(-) (comL) [Escherichia coli strain TW10590]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=305826 EXE32_RS11930 WP_000197686.1 2492141..2492878(-) (comL) [Escherichia coli strain TW10590]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment