Detailed information NTG0030582

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWG_RS13705
• Genome accession: NC_012759
• Coordinates: 2750393..2751385 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli BW2952
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2745393..2756385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWG_RS13685 (BWG_2473)	otnK	2746169..2747335 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
BWG_RS13690 (BWG_2474)	ygbL	2747427..2748065 (+)	639	WP_001278994.1	aldolase	-
BWG_RS13695 (BWG_2475)	ygbM	2748070..2748846 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BWG_RS13700 (BWG_2476)	ygbN	2748935..2750299 (+)	1365	WP_000104441.1	GntP family transporter	-
BWG_RS13705 (BWG_2477)	rpoS	2750393..2751385 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
BWG_RS13710 (BWG_2478)	nlpD	2751448..2752542 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BWG_RS13715 (BWG_2479)	pcm	2752727..2753353 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BWG_RS13720 (BWG_2480)	surE	2753347..2754108 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BWG_RS13725 (BWG_2481)	truD	2754089..2755138 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BWG_RS13730 (BWG_2482)	ispF	2755135..2755614 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWG_RS13735 (BWG_2483)	ispD	2755614..2756324 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=30582 BWG_RS13705 WP_000081588.1 2750393..2751385(-) (rpoS) [Escherichia coli BW2952]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=30582 BWG_RS13705 WP_000081588.1 2750393..2751385(-) (rpoS) [Escherichia coli BW2952]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715