Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   DV167_RS06020 Genome accession   NZ_CP031329
Coordinates   1027290..1028288 (+) Length   332 a.a.
NCBI ID   WP_002214152.1    Uniprot ID   X5F838
Organism   Neisseria meningitidis strain M22425     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1022290..1033288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS05985 - 1022514..1023203 (-) 690 WP_002251195.1 DNA glycosylase -
  DV167_RS05995 rsmA 1023415..1024194 (+) 780 WP_002234739.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV167_RS06000 - 1024367..1025095 (+) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  DV167_RS06005 - 1025168..1025527 (+) 360 WP_002251194.1 hypothetical protein -
  DV167_RS06010 - 1025532..1025972 (+) 441 WP_002251193.1 protein YgfX -
  DV167_RS06015 folC 1026003..1027277 (+) 1275 WP_002251192.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV167_RS06020 tpc 1027290..1028288 (+) 999 WP_002214152.1 cell division protein FtsN Machinery gene
  DV167_RS06025 - 1028281..1028778 (+) 498 WP_002251191.1 CvpA family protein -
  DV167_RS14230 - 1028814..1028945 (+) 132 WP_256824360.1 hypothetical protein -
  DV167_RS06030 purF 1029091..1030635 (+) 1545 WP_002251190.1 amidophosphoribosyltransferase -
  DV167_RS06035 greB 1030735..1031226 (+) 492 WP_002234734.1 transcription elongation factor GreB -
  DV167_RS06040 - 1031285..1031911 (+) 627 WP_002214161.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35520.89 Da        Isoelectric Point: 10.1759

>NTDB_id=305786 DV167_RS06020 WP_002214152.1 1027290..1028288(+) (tpc) [Neisseria meningitidis strain M22425]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=305786 DV167_RS06020 WP_002214152.1 1027290..1028288(+) (tpc) [Neisseria meningitidis strain M22425]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5F838

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.884

100

0.937

Multiple sequence alignment