Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV167_RS03755 Genome accession   NZ_CP031329
Coordinates   672716..674461 (-) Length   581 a.a.
NCBI ID   WP_002251291.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 667716..679461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS03725 - 667884..668318 (+) 435 WP_002220974.1 hypothetical protein -
  DV167_RS03730 - 668377..668646 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  DV167_RS03735 lon 668828..671290 (-) 2463 WP_002251293.1 endopeptidase La -
  DV167_RS03745 - 671390..671566 (+) 177 WP_232693555.1 nitric oxide synthase -
  DV167_RS03750 - 671541..672644 (+) 1104 WP_002251292.1 class I SAM-dependent methyltransferase -
  DV167_RS03755 recD 672716..674461 (-) 1746 WP_002251291.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV167_RS03760 lolD 674529..675224 (-) 696 WP_002213504.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV167_RS03765 - 675217..676464 (-) 1248 WP_002213503.1 lipoprotein-releasing ABC transporter permease subunit -
  DV167_RS03770 - 676668..676946 (+) 279 WP_002220967.1 hypothetical protein -
  DV167_RS03775 recR 677002..677619 (-) 618 WP_002217147.1 recombination mediator RecR -
  DV167_RS03780 - 677686..679224 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62794.45 Da        Isoelectric Point: 6.0396

>NTDB_id=305774 DV167_RS03755 WP_002251291.1 672716..674461(-) (recD) [Neisseria meningitidis strain M22425]
MERQTDEFAQAAARAAIRFLERYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGEAHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNKAYCSHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=305774 DV167_RS03755 WP_002251291.1 672716..674461(-) (recD) [Neisseria meningitidis strain M22425]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGGTTTTTGGAACGCTATGCGGGTTCGGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTTGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCGACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAGCGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGTTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGATGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACAAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.345

99.828

0.952

Multiple sequence alignment