Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA01_RS22275 Genome accession   NZ_CP035846
Coordinates   4599572..4600048 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain TW10598     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4594572..4605048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS25620 - 4596192..4596794 (+) 603 Protein_4376 hypothetical protein -
  EXA01_RS22235 tmaR 4596966..4597295 (+) 330 WP_000450409.1 DUF496 family protein -
  EXA01_RS22240 - 4597396..4597578 (-) 183 WP_024169664.1 EutP/PduV family microcompartment system protein -
  EXA01_RS22245 - 4597632..4597778 (+) 147 Protein_4379 transposase domain-containing protein -
  EXA01_RS22250 - 4598067..4598147 (-) 81 Protein_4380 hypothetical protein -
  EXA01_RS22255 yeeW 4598193..4598387 (-) 195 WP_000988599.1 DUF5983 family protein -
  EXA01_RS22260 cbtA 4598384..4598757 (-) 374 Protein_4382 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EXA01_RS22265 cbeA 4598846..4599214 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EXA01_RS22270 yeeT 4599288..4599509 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  EXA01_RS22275 radC 4599572..4600048 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  EXA01_RS22280 - 4600064..4600543 (-) 480 WP_000860076.1 antirestriction protein -
  EXA01_RS22285 - 4600625..4601446 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  EXA01_RS25625 - 4601667..4601744 (-) 78 Protein_4388 hypothetical protein -
  EXA01_RS25630 - 4601736..4601924 (+) 189 Protein_4389 IS4 family transposase -
  EXA01_RS25635 - 4601921..4602094 (+) 174 Protein_4390 cobalamin biosynthesis protein -
  EXA01_RS22290 cobU 4602228..4602774 (+) 547 Protein_4391 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  EXA01_RS22295 cobS 4602771..4603514 (+) 744 WP_001355648.1 adenosylcobinamide-GDP ribazoletransferase -
  EXA01_RS22300 cobT 4603526..4604605 (+) 1080 WP_001193822.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=305770 EXA01_RS22275 WP_001186773.1 4599572..4600048(-) (radC) [Escherichia coli strain TW10598]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305770 EXA01_RS22275 WP_001186773.1 4599572..4600048(-) (radC) [Escherichia coli strain TW10598]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment