Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EXA01_RS22130 Genome accession   NZ_CP035846
Coordinates   4583281..4584705 (-) Length   474 a.a.
NCBI ID   WP_000132552.1    Uniprot ID   -
Organism   Escherichia coli strain TW10598     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4578281..4589705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS22100 yeeZ 4578336..4579160 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  EXA01_RS22105 yeeY 4579206..4580135 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  EXA01_RS22110 yoeI 4580350..4580412 (+) 63 WP_010723108.1 membrane protein YoeI -
  EXA01_RS22115 plaP 4580402..4581760 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EXA01_RS22120 tsuA 4581939..4582997 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  EXA01_RS22125 tsuB 4583011..4583238 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EXA01_RS22130 sbcB 4583281..4584705 (-) 1425 WP_000132552.1 exodeoxyribonuclease I Machinery gene
  EXA01_RS22135 - 4584887..4586065 (+) 1179 WP_001007954.1 site-specific integrase -
  EXA01_RS22140 - 4586046..4586237 (-) 192 WP_000132739.1 AlpA family transcriptional regulator -
  EXA01_RS22145 - 4586315..4586659 (-) 345 WP_001281204.1 hypothetical protein -
  EXA01_RS22150 - 4586818..4587096 (-) 279 WP_000286785.1 DUF4752 family protein -
  EXA01_RS22155 - 4587096..4587446 (-) 351 Protein_4361 dATP/dGTP pyrophosphohydrolase domain-containing protein -
  EXA01_RS22160 - 4587448..4587975 (-) 528 Protein_4362 Rad52/Rad22 family DNA repair protein -
  EXA01_RS22165 kil 4588230..4588382 (-) 153 WP_001243352.1 host cell division inhibitory peptide Kil -
  EXA01_RS25930 - 4588367..4588501 (-) 135 WP_000972063.1 hypothetical protein -
  EXA01_RS22175 - 4588697..4589166 (-) 470 Protein_4365 hypothetical protein -
  EXA01_RS22185 - 4589229..4589453 (-) 225 WP_001077327.1 hypothetical protein -
  EXA01_RS25615 - 4589457..4589525 (-) 69 Protein_4367 antitermination protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54411.70 Da        Isoelectric Point: 5.3476

>NTDB_id=305769 EXA01_RS22130 WP_000132552.1 4583281..4584705(-) (sbcB) [Escherichia coli strain TW10598]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDKAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMIIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=305769 EXA01_RS22130 WP_000132552.1 4583281..4584705(-) (sbcB) [Escherichia coli strain TW10598]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAAAGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGATAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586

Multiple sequence alignment