Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV144_RS10760 Genome accession   NZ_CP031328
Coordinates   1809308..1810687 (-) Length   459 a.a.
NCBI ID   WP_101092834.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1804308..1815687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS10735 recB 1804413..1808027 (+) 3615 WP_115430841.1 exodeoxyribonuclease V subunit beta Machinery gene
  DV144_RS10740 - 1808066..1808425 (+) 360 WP_002244926.1 rhodanese-like domain-containing protein -
  DV144_RS10750 - 1808557..1809036 (+) 480 WP_002226489.1 DUF302 domain-containing protein -
  DV144_RS10760 radA 1809308..1810687 (-) 1380 WP_101092834.1 DNA repair protein RadA Machinery gene
  DV144_RS13550 - 1810715..1810888 (+) 174 WP_153317766.1 hypothetical protein -
  DV144_RS10765 hemE 1810876..1811940 (-) 1065 WP_115430842.1 uroporphyrinogen decarboxylase -
  DV144_RS10770 - 1812015..1813232 (-) 1218 WP_002239650.1 heme biosynthesis protein HemY -
  DV144_RS10775 - 1813229..1814503 (-) 1275 WP_079870918.1 uroporphyrinogen-III C-methyltransferase -
  DV144_RS10780 - 1814578..1815339 (-) 762 WP_002232081.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49559.07 Da        Isoelectric Point: 7.0604

>NTDB_id=305749 DV144_RS10760 WP_101092834.1 1809308..1810687(-) (radA) [Neisseria meningitidis strain M18755]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICREDRD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=305749 DV144_RS10760 WP_101092834.1 1809308..1810687(-) (radA) [Neisseria meningitidis strain M18755]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACCTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTATACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAAGCAGCG
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
TTCTGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCTAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCACACGGCTTCACC
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTATTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTTTTAAACGCCGTCGGCGGTGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTTGCATTTGGAGAAATCGGTTTGAGCGGTGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAGGAAGCGGAAAAGCTCGGCTTTAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATTGATATTT
GTCGGGAAGATAGGGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466
  radA Streptococcus mitis NCTC 12261

47.45

98.257

0.466

Multiple sequence alignment