Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV144_RS08725 Genome accession   NZ_CP031328
Coordinates   1491517..1493262 (+) Length   581 a.a.
NCBI ID   WP_101092816.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1486517..1498262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS08700 - 1486754..1488292 (+) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -
  DV144_RS08705 recR 1488359..1488976 (+) 618 WP_002217147.1 recombination mediator RecR -
  DV144_RS08710 - 1489032..1489310 (-) 279 WP_002213502.1 hypothetical protein -
  DV144_RS08715 - 1489514..1490761 (+) 1248 WP_115430809.1 lipoprotein-releasing ABC transporter permease subunit -
  DV144_RS08720 lolD 1490754..1491449 (+) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV144_RS08725 recD 1491517..1493262 (+) 1746 WP_101092816.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV144_RS08730 - 1493290..1494393 (-) 1104 WP_063399707.1 class I SAM-dependent methyltransferase -
  DV144_RS08735 - 1494368..1494544 (-) 177 WP_226893060.1 nitric oxide synthase -
  DV144_RS08745 lon 1494644..1497106 (+) 2463 WP_115430810.1 endopeptidase La -
  DV144_RS08750 - 1497288..1497557 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  DV144_RS08755 - 1497616..1498050 (-) 435 WP_002217157.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63008.55 Da        Isoelectric Point: 5.8599

>NTDB_id=305742 DV144_RS08725 WP_101092816.1 1491517..1493262(+) (recD) [Neisseria meningitidis strain M18755]
MERQTDEFAQAAARAAIWFLARYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDEPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDHIRPLPLDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTTHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSRGLLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=305742 DV144_RS08725 WP_101092816.1 1491517..1493262(+) (recD) [Neisseria meningitidis strain M18755]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGAGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCTAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTGGACGTATTG
GTTATCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCACAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCACCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGTGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGGGAAAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.836

100

0.948

Multiple sequence alignment