Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA01_RS13595 Genome accession   NZ_CP035846
Coordinates   2808705..2809373 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain TW10598     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2803705..2814373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS13565 yicC 2803724..2804587 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  EXA01_RS13570 rph 2804714..2805430 (+) 717 WP_001247089.1 ribonuclease PH -
  EXA01_RS13575 pyrE 2805496..2806137 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  EXA01_RS13580 slmA 2806174..2806770 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EXA01_RS13585 dut 2806877..2807335 (-) 459 WP_000976070.1 dUTP diphosphatase -
  EXA01_RS13590 coaBC 2807313..2808533 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EXA01_RS13595 radC 2808705..2809373 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  EXA01_RS13600 rpmB 2809590..2809826 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  EXA01_RS13605 rpmG 2809847..2810014 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  EXA01_RS13610 mutM 2810112..2810921 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EXA01_RS13615 coaD 2810960..2811439 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  EXA01_RS13620 waaA 2811447..2812724 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EXA01_RS13625 rfaQ 2813137..2814195 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=305737 EXA01_RS13595 WP_001297375.1 2808705..2809373(+) (radC) [Escherichia coli strain TW10598]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305737 EXA01_RS13595 WP_001297375.1 2808705..2809373(+) (radC) [Escherichia coli strain TW10598]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496