Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA01_RS13200 Genome accession   NZ_CP035846
Coordinates   2728553..2729029 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain TW10598     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2723553..2734029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS25540 rhuM 2724694..2724855 (-) 162 Protein_2589 RhuM family protein -
  EXA01_RS13165 - 2725092..2725930 (-) 839 Protein_2590 DUF4942 domain-containing protein -
  EXA01_RS13170 - 2726027..2726224 (-) 198 WP_000839275.1 DUF957 domain-containing protein -
  EXA01_RS13175 - 2726236..2726724 (-) 489 WP_000761693.1 DUF5983 family protein -
  EXA01_RS13180 - 2726721..2727098 (-) 378 WP_000854743.1 TA system toxin CbtA family protein -
  EXA01_RS13185 - 2727188..2727556 (-) 369 WP_001285298.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA01_RS13190 - 2727606..2728250 (-) 645 WP_000086754.1 hypothetical protein -
  EXA01_RS13195 - 2728269..2728490 (-) 222 WP_000692307.1 DUF987 domain-containing protein -
  EXA01_RS13200 radC 2728553..2729029 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA01_RS13205 - 2729044..2729529 (-) 486 WP_000206659.1 antirestriction protein -
  EXA01_RS13210 - 2729621..2729779 (-) 159 Protein_2599 DUF945 domain-containing protein -
  EXA01_RS13215 - 2729809..2731380 (-) 1572 WP_000381401.1 IS66 family transposase -
  EXA01_RS13220 tnpB 2731400..2731747 (-) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  EXA01_RS13225 tnpA 2731747..2732424 (-) 678 WP_001704819.1 IS66-like element accessory protein TnpA -
  EXA01_RS13230 - 2732478..2733149 (-) 672 Protein_2603 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305735 EXA01_RS13200 WP_001186774.1 2728553..2729029(-) (radC) [Escherichia coli strain TW10598]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305735 EXA01_RS13200 WP_001186774.1 2728553..2729029(-) (radC) [Escherichia coli strain TW10598]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment