Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DV155_RS09645 Genome accession   NZ_CP031326
Coordinates   1628275..1631520 (+) Length   1081 a.a.
NCBI ID   WP_002241900.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21374     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1623275..1636520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV155_RS09620 ccoO 1624422..1625033 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  DV155_RS09625 - 1625038..1625208 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  DV155_RS09630 ccoP 1625232..1626095 (+) 864 Protein_1575 cytochrome-c oxidase, cbb3-type subunit III -
  DV155_RS14040 - 1626219..1626563 (+) 345 Protein_1576 cytochrome c5 family protein -
  DV155_RS09640 - 1626765..1628174 (+) 1410 WP_041423697.1 PepSY domain-containing protein -
  DV155_RS09645 recC 1628275..1631520 (+) 3246 WP_002241900.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DV155_RS09650 mtrF 1631551..1633119 (-) 1569 WP_002224346.1 AbgT family antimetabolite efflux transporter MtrF -
  DV155_RS09655 - 1633453..1633665 (+) 213 WP_002235133.1 hypothetical protein -
  DV155_RS09660 mtrR 1633944..1634576 (-) 633 WP_115431806.1 multidrug efflux system transcriptional repressor MtrR -
  DV155_RS09665 mtrC 1634980..1636218 (+) 1239 WP_002230810.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1081 a.a.        Molecular weight: 122176.99 Da        Isoelectric Point: 4.8306

>NTDB_id=305709 DV155_RS09645 WP_002241900.1 1628275..1631520(+) (recC) [Neisseria meningitidis strain M21374]
MFYLYQSNRLETLAALFAHIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLAFSLPASLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYTLECLSDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFIESLSDIVRIWRQPATVGEWVARCRDLLETLFQAEADDQK
SVQNLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQ
NLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKRKRPEQPDGMERQMPSESV

Nucleotide


Download         Length: 3246 bp        

>NTDB_id=305709 DV155_RS09645 WP_002241900.1 1628275..1631520(+) (recC) [Neisseria meningitidis strain M21374]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCACATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCAGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGCATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGAAGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTAGGCAGCGGCGAATCGGCAGATTACCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTTGTCTATCGTCCGCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGATGAGATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAACTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATCTTCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGCGAAACGCCGGTAT
TTGAAGAAGGCGGACGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCCTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAACATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCAGACGTGAAA
ATCAGCCGCCGACAACCGTTTTTTTATACATTGGAATGCCTGTCCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTCGCGCTTTTGGAAACCGCGCCCGTATTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGATATGG
TTGCCGATTTGAACGTTCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTCACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCTTTATCGAGTCCCTGTCGGATATTGTACGGATATGGCGGCAGC
CCGCAACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGCTGAAGCCGATGACCAAAAG
TCAGTCCAAAACCTTGAAAACGAATGGGTCAAATGGCAGGCGGAAACAGAATTGGCGCAATTTTCCGGACAGTTGCCGCC
GCACACCGTCATCCGCCATATCCGACGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGTAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGATGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGTGAAATCCTCTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAAC
TGGCTCCGTCTTCTTTGTTGGGCGAACTCATCGACACAGTTGCCGCCATGACCGGCACAAACAGCCGCCAACTTGCACAA
AACCTGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTTCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGATCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCTGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAACCTACATCGAAGCACGGCGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACTGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCACCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAGGAAGAGGCCGGA
GCAGCCTGACGGGATGGAAAGGCAAATGCCGTCTGAAAGCGTTTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-997)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.831

98.427

0.933

Multiple sequence alignment