Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA01_RS04480 Genome accession   NZ_CP035846
Coordinates   906652..907128 (-) Length   158 a.a.
NCBI ID   WP_001186721.1    Uniprot ID   -
Organism   Escherichia coli strain TW10598     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901652..912128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS04435 - 901836..902678 (-) 843 WP_001529751.1 DUF4942 domain-containing protein -
  EXA01_RS04440 - 902763..902960 (-) 198 WP_000839253.1 DUF957 domain-containing protein -
  EXA01_RS04445 - 902977..903465 (-) 489 WP_001054233.1 DUF5983 family protein -
  EXA01_RS04450 - 903462..903845 (-) 384 WP_000854686.1 TA system toxin CbtA family protein -
  EXA01_RS04455 - 903926..904306 (-) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA01_RS04460 - 904317..904691 (-) 375 Protein_885 antitoxin of the YeeV-YeeU toxin-antitoxin system -
  EXA01_RS04465 - 904867..905979 (-) 1113 WP_001300563.1 IS4-like element IS421 family transposase -
  EXA01_RS04470 - 906047..906349 (-) 303 Protein_887 hypothetical protein -
  EXA01_RS04475 - 906368..906589 (-) 222 WP_000692298.1 DUF987 domain-containing protein -
  EXA01_RS04480 radC 906652..907128 (-) 477 WP_001186721.1 RadC family protein Machinery gene
  EXA01_RS04485 - 907144..907629 (-) 486 WP_000214307.1 antirestriction protein -
  EXA01_RS04490 - 907721..908539 (-) 819 WP_001234726.1 DUF932 domain-containing protein -
  EXA01_RS04495 - 908639..908872 (-) 234 WP_001119717.1 DUF905 family protein -
  EXA01_RS04500 - 908951..909405 (-) 455 Protein_893 IrmA family protein -
  EXA01_RS04505 - 909481..911997 (-) 2517 WP_001531238.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17645.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305700 EXA01_RS04480 WP_001186721.1 906652..907128(-) (radC) [Escherichia coli strain TW10598]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEAHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305700 EXA01_RS04480 WP_001186721.1 906652..907128(-) (radC) [Escherichia coli strain TW10598]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGCCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386