Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA02_RS21455 Genome accession   NZ_CP035841
Coordinates   4407163..4407639 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain TW10722     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4402163..4412639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA02_RS21415 - 4403006..4403086 (-) 81 Protein_4212 hypothetical protein -
  EXA02_RS21420 - 4403186..4403338 (-) 153 Protein_4213 DUF5983 family protein -
  EXA02_RS21425 - 4403335..4403709 (-) 375 WP_000854762.1 TA system toxin CbtA family protein -
  EXA02_RS21430 - 4403799..4404167 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA02_RS21435 - 4404265..4404699 (+) 435 WP_001403014.1 transposase -
  EXA02_RS21440 tnpB 4404696..4405046 (+) 351 WP_000624688.1 IS66 family insertion sequence element accessory protein TnpB -
  EXA02_RS21445 - 4405077..4406690 (+) 1614 WP_001744949.1 IS66-like element ISEc47 family transposase -
  EXA02_RS21450 - 4406879..4407100 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  EXA02_RS21455 radC 4407163..4407639 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA02_RS21460 - 4407655..4408128 (-) 474 WP_000855059.1 antirestriction protein -
  EXA02_RS21465 - 4408470..4409288 (-) 819 WP_001502865.1 DUF932 domain-containing protein -
  EXA02_RS21470 - 4409406..4409601 (-) 196 Protein_4223 DUF905 family protein -
  EXA02_RS21475 - 4409672..4412518 (-) 2847 WP_001745291.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305682 EXA02_RS21455 WP_001186774.1 4407163..4407639(-) (radC) [Escherichia coli strain TW10722]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305682 EXA02_RS21455 WP_001186774.1 4407163..4407639(-) (radC) [Escherichia coli strain TW10722]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment