Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DV115_RS08210 Genome accession   NZ_CP031325
Coordinates   1473970..1476012 (+) Length   680 a.a.
NCBI ID   WP_003754272.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1468970..1481012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS08185 - 1469415..1470089 (+) 675 WP_003754266.1 response regulator transcription factor -
  DV115_RS08190 - 1470171..1471421 (+) 1251 WP_025456924.1 ATP-binding protein -
  DV115_RS08195 rng 1471456..1472949 (-) 1494 WP_003754268.1 ribonuclease G -
  DV115_RS08200 grxC 1473163..1473420 (+) 258 WP_002214462.1 glutaredoxin 3 -
  DV115_RS08205 secB 1473441..1473884 (+) 444 WP_003754271.1 protein-export chaperone SecB -
  DV115_RS08210 recG 1473970..1476012 (+) 2043 WP_003754272.1 ATP-dependent DNA helicase RecG Machinery gene
  DV115_RS08220 argC 1476455..1477498 (-) 1044 WP_003754274.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DV115_RS08225 - 1477572..1478021 (-) 450 WP_003754275.1 DUF6636 domain-containing protein -
  DV115_RS08230 - 1478026..1479246 (-) 1221 WP_003754276.1 YihY family inner membrane protein -
  DV115_RS08245 queC 1479762..1480421 (+) 660 WP_003754279.1 7-cyano-7-deazaguanine synthase QueC -
  DV115_RS08250 - 1480454..1480975 (+) 522 WP_003754280.1 DUF1543 domain-containing protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 74986.10 Da        Isoelectric Point: 8.1584

>NTDB_id=305654 DV115_RS08210 WP_003754272.1 1473970..1476012(+) (recG) [Neisseria polysaccharea strain M18661]
MMPPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADDSGSVLFLRFIHFYAGHQKQTAAGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSA
AALRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRL
ALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRTEVEGFVLNTCRKGRQAYWVCPLI
EESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEE
DLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=305654 DV115_RS08210 WP_003754272.1 1473970..1476012(+) (recG) [Neisseria polysaccharea strain M18661]
ATGATGCCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAATCTTCATAC
CGCGTGGGATTTGGTTTTGCATTTGCCGCTGCGTTACGAGGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATCG
GCGTGCCGTGCCAGGTCGAGGGCGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATT
GCCGACGATTCCGGCAGCGTTCTTTTTCTGCGCTTCATCCACTTTTACGCCGGCCATCAGAAACAGACGGCGGCCGGCAA
ACGCATCCGTGCCGTGGGCGAAATCAAACACGGCTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCGGCGGTTTGGCGGAAAGCCTCACGCCGGTTTACCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTATGCCGTCTGAAGCTGCCGCACCTTGC
CGAAAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACGATTCATCAGCTTTCAGACGGCACGCTGCCGGCGTGGC
AGCGGCTCAAATTCGACGAACTTTTGGCGCAACAGCTTTCTATGCGGCTGGCGCGGCAGAAGCGTATCGGCGGCTCGGCG
GCGGCATTGCGCGGCAATGGCGTATTGACCCAAGCCCTGCGCCGCGCCCTGCCGTTTGCCCTGACCGATGCACAAGAAAA
CGTGTTGGCGGAAGTTCAAACCGATATGGCGCAAACGCACCCGATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCCGGCGCGCAGGTGGCTGTAATGGCTCCCACTGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGAGCCTTTGGGTATTGAGGTTGTCCGCCTTTTTGGCAGTTT
GCGTAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCAGCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGGCGTGGCGTTTCACAATTTAGGCTTGACCATCGTGGACGAACAGCACCGTTTCGGCGTTGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGAAGTCCATCAGCTGATGATGTCCGCCACGCCCATCCCGCGTACGCTTGCGATGAGTTT
TTTCGCCGATTTGGACGTGTCCGTCATCGACAAACTGCCGCCCGGGCGCACCCCGATTAAAACGCGCCTCGTCAACAACG
TCCGCCGCACCGAAGTCGAAGGCTTCGTCCTCAATACTTGCCGAAAAGGGCGGCAGGCGTATTGGGTCTGCCCATTGATT
GAAGAAAGCGAAACCCTGCAATTGCAAACCGCCGCCGAAACCCTCGCCCGGCTTCAGACGGCATTGCCCGAGCTGAATAT
CGGACTGGTACACGGGCGTATGAAGGCCGCCGAAAAAGCCGAAGTTATGGCGGAATTTGCCGCAGGCCGTCTGAACGTCT
TGGTTGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATTGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTTCACCAATTACGCGGACGGGTAGGGCGCGGCGCGGCGGAAAGCGTGTGCGTCCTCCTGTTTGCCGA
ACCCTTGGGCGAACTCGCCAAAGCGCGGTTGAAAGTGATTTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAATATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGTCAAAGCGGCGTTCCTATGCTGCGTTTCGCCAAGCTCGAAGAA
GACTTACACCTTTTGGAACAAGCGCGCGAAATCGCCCCGATACTGATTGAGCAAAACCCCGAAATCGTCGAAGCGCATTT
GGCAAGGTGGCTTTCCGGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

RecG wedge domain (RecG_wedge)

(15-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

DEAD/DEAH box helicase (DEAD)

(283-421)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

96.176

100

0.962

Multiple sequence alignment