Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA03_RS20990 Genome accession   NZ_CP035836
Coordinates   4285037..4285513 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli strain WS1933D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4280037..4290513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS20960 tnpB 4280188..4280535 (-) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  EXA03_RS20965 tnpA 4280535..4281212 (-) 678 WP_001339397.1 IS66-like element accessory protein TnpA -
  EXA03_RS20970 - 4281908..4283014 (+) 1107 WP_000633074.1 SMEK domain-containing protein -
  EXA03_RS20975 ykfI 4284109..4284450 (-) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  EXA03_RS20980 yafW 4284471..4284788 (-) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  EXA03_RS20985 - 4284807..4285028 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  EXA03_RS20990 radC 4285037..4285513 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  EXA03_RS20995 - 4285529..4285987 (-) 459 WP_000211838.1 antirestriction protein -
  EXA03_RS21000 ykfF 4286085..4286324 (-) 240 WP_000194654.1 DUF905 family protein -
  EXA03_RS21005 ykfB 4286401..4286868 (-) 468 WP_001385283.1 protein YkfB -
  EXA03_RS21010 yfjS 4286891..4287334 (-) 444 WP_000649865.1 YfjS/YafY family lipoprotein -
  EXA03_RS21015 ypjK 4287334..4287570 (-) 237 WP_001144031.1 protein YpjK -
  EXA03_RS21020 yfjR 4287611..4288312 (-) 702 WP_000189411.1 WYL domain-containing protein -
  EXA03_RS21025 - 4288529..4289350 (-) 822 WP_001385280.1 DUF932 domain-containing protein -
  EXA03_RS21030 - 4289442..4290305 (-) 864 WP_001065555.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=305595 EXA03_RS20990 WP_000811693.1 4285037..4285513(-) (radC) [Escherichia coli strain WS1933D]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305595 EXA03_RS20990 WP_000811693.1 4285037..4285513(-) (radC) [Escherichia coli strain WS1933D]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment