Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DW289_RS18980 Genome accession   NZ_CP031321
Coordinates   3746403..3747032 (+) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3741403..3752032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW289_RS18955 (DW289_18955) ycbZ 3741804..3743564 (-) 1761 WP_000156524.1 Lon protease family protein -
  DW289_RS18960 (DW289_18960) matP 3743750..3744202 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DW289_RS18965 (DW289_18965) ompA 3744278..3745318 (-) 1041 WP_000750416.1 porin OmpA -
  DW289_RS18975 (DW289_18975) sulA 3745675..3746184 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DW289_RS18980 (DW289_18980) sxy/tfoX 3746403..3747032 (+) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DW289_RS18985 (DW289_18985) yccS 3746995..3749157 (-) 2163 WP_000875023.1 YccS family putative transporter -
  DW289_RS18990 (DW289_18990) yccF 3749167..3749613 (-) 447 WP_001261235.1 YccF domain-containing protein -
  DW289_RS18995 (DW289_18995) helD 3749736..3751790 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=305579 DW289_RS18980 WP_000793792.1 3746403..3747032(+) (sxy/tfoX) [Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305579 DW289_RS18980 WP_000793792.1 3746403..3747032(+) (sxy/tfoX) [Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment