Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA03_RS15425 Genome accession   NZ_CP035836
Coordinates   3117136..3117804 (-) Length   222 a.a.
NCBI ID   WP_001295236.1    Uniprot ID   -
Organism   Escherichia coli strain WS1933D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3112136..3122804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS15395 rfaQ 3112314..3113372 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EXA03_RS15400 waaA 3113785..3115062 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EXA03_RS15405 coaD 3115070..3115549 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EXA03_RS15410 mutM 3115588..3116397 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EXA03_RS15415 rpmG 3116495..3116662 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EXA03_RS15420 rpmB 3116683..3116919 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EXA03_RS15425 radC 3117136..3117804 (-) 669 WP_001295236.1 DNA repair protein RadC Machinery gene
  EXA03_RS15430 coaBC 3117976..3119196 (+) 1221 WP_000050110.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EXA03_RS15435 dut 3119174..3119632 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EXA03_RS15440 slmA 3119739..3120335 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EXA03_RS15445 pyrE 3120372..3121013 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EXA03_RS15450 rph 3121079..3121795 (-) 717 WP_001247093.1 ribonuclease PH -
  EXA03_RS15455 yicC 3121922..3122785 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25200.31 Da        Isoelectric Point: 8.4958

>NTDB_id=305571 EXA03_RS15425 WP_001295236.1 3117136..3117804(-) (radC) [Escherichia coli strain WS1933D]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMRAESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305571 EXA03_RS15425 WP_001295236.1 3117136..3117804(-) (radC) [Escherichia coli strain WS1933D]
GTGAAAAATAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGCAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496