Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA03_RS10450 Genome accession   NZ_CP035836
Coordinates   2089448..2089924 (-) Length   158 a.a.
NCBI ID   WP_001484796.1    Uniprot ID   -
Organism   Escherichia coli strain WS1933D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2084448..2094924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS10420 - 2086631..2087476 (-) 846 WP_001280506.1 DUF4942 domain-containing protein -
  EXA03_RS10425 - 2087561..2087758 (-) 198 WP_000839264.1 DUF957 domain-containing protein -
  EXA03_RS10430 - 2087769..2088260 (-) 492 WP_000977086.1 DUF5983 family protein -
  EXA03_RS10435 - 2088257..2088631 (-) 375 WP_001094452.1 TA system toxin CbtA family protein -
  EXA03_RS10440 - 2088721..2089089 (-) 369 WP_016255729.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA03_RS10445 - 2089164..2089385 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  EXA03_RS10450 radC 2089448..2089924 (-) 477 WP_001484796.1 RadC family protein Machinery gene
  EXA03_RS10455 - 2089939..2090424 (-) 486 WP_000213708.1 antirestriction protein -
  EXA03_RS10460 - 2090516..2091334 (-) 819 WP_001234594.1 DUF932 domain-containing protein -
  EXA03_RS10465 - 2091434..2091667 (-) 234 WP_001117567.1 DUF905 family protein -
  EXA03_RS10470 - 2091739..2094585 (-) 2847 WP_000820429.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17686.27 Da        Isoelectric Point: 6.9859

>NTDB_id=305550 EXA03_RS10450 WP_001484796.1 2089448..2089924(-) (radC) [Escherichia coli strain WS1933D]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNATAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305550 EXA03_RS10450 WP_001484796.1 2089448..2089924(-) (radC) [Escherichia coli strain WS1933D]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGAGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACT
ATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTATACCACAATGCCACTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTTTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386