Detailed information NTG0305546

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXA03_RS09975
• Genome accession: NZ_CP035836
• Coordinates: 2001775..2002767 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WS1933D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1996775..2007767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXA03_RS09945	ispD	1996836..1997546 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EXA03_RS09950	ispF	1997546..1998025 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXA03_RS09955	truD	1998022..1999071 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EXA03_RS09960	surE	1999052..1999813 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EXA03_RS09965	pcm	1999807..2000433 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXA03_RS09970	nlpD	2000618..2001712 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EXA03_RS09975	rpoS	2001775..2002767 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXA03_RS09980	-	2002888..2003295 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
EXA03_RS09985	-	2003442..2004035 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EXA03_RS09990	-	2004035..2005462 (+)	1428	WP_000863215.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EXA03_RS09995	-	2005473..2005709 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EXA03_RS10000	ygbN	2005749..2007113 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305546 EXA03_RS09975 WP_000081550.1 2001775..2002767(+) (rpoS) [Escherichia coli strain WS1933D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305546 EXA03_RS09975 WP_000081550.1 2001775..2002767(+) (rpoS) [Escherichia coli strain WS1933D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715