Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA03_RS06495 Genome accession   NZ_CP035836
Coordinates   1276549..1277025 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain WS1933D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271549..1282025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS06475 - 1271670..1274517 (+) 2848 Protein_1280 Ag43/Cah family autotransporter adhesin -
  EXA03_RS06480 - 1274596..1274782 (+) 187 Protein_1281 DUF905 family protein -
  EXA03_RS06485 - 1274900..1275718 (+) 819 WP_001234729.1 DUF932 domain-containing protein -
  EXA03_RS06490 - 1276060..1276533 (+) 474 WP_000855059.1 antirestriction protein -
  EXA03_RS06495 radC 1276549..1277025 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA03_RS06500 yeeT 1277088..1277309 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  EXA03_RS06505 - 1277472..1277840 (+) 369 WP_001383228.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA03_RS06510 - 1277970..1278119 (+) 150 Protein_1287 DUF5983 family protein -
  EXA03_RS06515 - 1278219..1278299 (+) 81 Protein_1288 hypothetical protein -
  EXA03_RS26525 - 1279097..1279486 (+) 390 WP_089079246.1 transposase -
  EXA03_RS26530 - 1279757..1280122 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  EXA03_RS06530 tmaR 1280223..1280552 (-) 330 WP_000450409.1 DUF496 family protein -
  EXA03_RS06535 yeeA 1280724..1281782 (-) 1059 WP_001383230.1 FUSC family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305535 EXA03_RS06495 WP_001186774.1 1276549..1277025(+) (radC) [Escherichia coli strain WS1933D]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305535 EXA03_RS06495 WP_001186774.1 1276549..1277025(+) (radC) [Escherichia coli strain WS1933D]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399