Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EXA03_RS00575 Genome accession   NZ_CP035836
Coordinates   114656..115285 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain WS1933D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 109656..120285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS00555 ycbZ 110057..111817 (-) 1761 WP_000156518.1 Lon protease family protein -
  EXA03_RS00560 matP 112003..112455 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EXA03_RS00565 ompA 112531..113571 (-) 1041 WP_000750416.1 porin OmpA -
  EXA03_RS00570 sulA 113928..114437 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EXA03_RS00575 sxy/tfoX 114656..115285 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EXA03_RS00580 yccS 115248..117410 (-) 2163 WP_000875061.1 YccS family putative transporter -
  EXA03_RS00585 yccF 117420..117866 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EXA03_RS00590 helD 117989..120043 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=305523 EXA03_RS00575 WP_000839153.1 114656..115285(+) (sxy/tfoX) [Escherichia coli strain WS1933D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305523 EXA03_RS00575 WP_000839153.1 114656..115285(+) (sxy/tfoX) [Escherichia coli strain WS1933D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1