Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXA04_RS19025 Genome accession   NZ_CP035832
Coordinates   3868560..3869165 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 025542-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3863560..3874165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA04_RS19005 aes 3863597..3864556 (+) 960 WP_000801846.1 acetyl esterase -
  EXA04_RS19010 hemH 3864553..3865515 (-) 963 WP_001250088.1 ferrochelatase -
  EXA04_RS19015 adk 3865751..3866395 (-) 645 WP_001220233.1 adenylate kinase -
  EXA04_RS19020 htpG 3866576..3868450 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  EXA04_RS19025 recR 3868560..3869165 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXA04_RS19030 ybaB 3869165..3869494 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXA04_RS19035 dnaX 3869547..3871478 (-) 1932 WP_001695447.1 DNA polymerase III subunit gamma/tau -
  EXA04_RS19040 apt 3871607..3872158 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXA04_RS19045 ybaN 3872311..3872688 (-) 378 WP_001188905.1 DUF454 family protein -
  EXA04_RS19050 priC 3872758..3873285 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  EXA04_RS19055 rsmS 3873299..3873460 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXA04_RS26650 - 3873513..3873611 (-) 99 Protein_3760 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305495 EXA04_RS19025 WP_001195025.1 3868560..3869165(-) (recR) [Escherichia coli strain 025542-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305495 EXA04_RS19025 WP_001195025.1 3868560..3869165(-) (recR) [Escherichia coli strain 025542-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443