Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA04_RS15700 Genome accession   NZ_CP035832
Coordinates   3164059..3164535 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 025542-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3159059..3169535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA04_RS15655 ghrA 3159183..3160121 (-) 939 WP_000351317.1 glyoxylate/hydroxypyruvate reductase GhrA -
  EXA04_RS15665 - 3160592..3161434 (-) 843 WP_001696893.1 DUF4942 domain-containing protein -
  EXA04_RS15670 - 3161519..3161716 (-) 198 WP_000839253.1 DUF957 domain-containing protein -
  EXA04_RS15675 - 3161733..3162221 (-) 489 WP_001696892.1 DUF5983 family protein -
  EXA04_RS15680 - 3162218..3162601 (-) 384 WP_000854686.1 TA system toxin CbtA family protein -
  EXA04_RS15685 - 3162682..3163062 (-) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA04_RS15690 - 3163073..3163756 (-) 684 WP_001696891.1 hypothetical protein -
  EXA04_RS15695 - 3163775..3163996 (-) 222 WP_001696890.1 DUF987 domain-containing protein -
  EXA04_RS15700 radC 3164059..3164535 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  EXA04_RS15705 - 3164551..3165036 (-) 486 WP_001697217.1 antirestriction protein -
  EXA04_RS15710 - 3165128..3165946 (-) 819 WP_001697216.1 DUF932 domain-containing protein -
  EXA04_RS15715 - 3166046..3166279 (-) 234 WP_001119719.1 DUF905 family protein -
  EXA04_RS15720 - 3166358..3166812 (-) 455 Protein_3106 IrmA family protein -
  EXA04_RS15725 - 3166888..3169404 (-) 2517 WP_001697215.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=305487 EXA04_RS15700 WP_001186726.1 3164059..3164535(-) (radC) [Escherichia coli strain 025542-1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305487 EXA04_RS15700 WP_001186726.1 3164059..3164535(-) (radC) [Escherichia coli strain 025542-1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392