Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA04_RS09675 Genome accession   NZ_CP035832
Coordinates   2002380..2002856 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain 025542-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1997380..2007856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA04_RS09640 - 1998498..1999237 (-) 740 Protein_1897 IS3-like element IS629 family transposase -
  EXA04_RS09645 - 1999287..2000651 (+) 1365 Protein_1898 IS66-like element ISEc23 family transposase -
  EXA04_RS09650 - 2000772..2000852 (-) 81 Protein_1899 hypothetical protein -
  EXA04_RS09655 - 2000952..2001104 (-) 153 Protein_1900 DUF5983 family protein -
  EXA04_RS09660 - 2001101..2001475 (-) 375 WP_000854762.1 TA system toxin CbtA family protein -
  EXA04_RS09665 - 2001565..2001933 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA04_RS09670 - 2002096..2002317 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  EXA04_RS09675 radC 2002380..2002856 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA04_RS09680 - 2002872..2003345 (-) 474 WP_000855059.1 antirestriction protein -
  EXA04_RS09685 - 2003687..2004505 (-) 819 WP_001234652.1 DUF932 domain-containing protein -
  EXA04_RS09690 - 2004623..2004818 (-) 196 Protein_1907 DUF905 family protein -
  EXA04_RS09695 - 2004889..2007735 (-) 2847 WP_001760116.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305475 EXA04_RS09675 WP_001186774.1 2002380..2002856(-) (radC) [Escherichia coli strain 025542-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305475 EXA04_RS09675 WP_001186774.1 2002380..2002856(-) (radC) [Escherichia coli strain 025542-1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399