Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXA04_RS06240 Genome accession   NZ_CP035832
Coordinates   1266659..1267174 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 025542-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261659..1272174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA04_RS06195 csrA 1262246..1262431 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EXA04_RS06225 yqaB 1263889..1264455 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXA04_RS06230 yqaA 1264452..1264880 (+) 429 WP_001287457.1 YqaA family protein -
  EXA04_RS06235 gshA 1264953..1266509 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EXA04_RS06240 luxS 1266659..1267174 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EXA04_RS06245 emrB 1267238..1268776 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXA04_RS06250 emrA 1268793..1269965 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXA04_RS06255 emrR 1270092..1270622 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXA04_RS06260 ygaH 1270713..1271048 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EXA04_RS06265 ygaZ 1271038..1271775 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=305465 EXA04_RS06240 WP_001130211.1 1266659..1267174(+) (luxS) [Escherichia coli strain 025542-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305465 EXA04_RS06240 WP_001130211.1 1266659..1267174(+) (luxS) [Escherichia coli strain 025542-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731