Detailed information NTG0305462

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXA04_RS05895
• Genome accession: NZ_CP035832
• Coordinates: 1196843..1197835 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 025542-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1191843..1202835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXA04_RS05865	ispD	1191904..1192614 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EXA04_RS05870	ispF	1192614..1193093 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXA04_RS05875	truD	1193090..1194139 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
EXA04_RS05880	surE	1194120..1194881 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
EXA04_RS05885	pcm	1194875..1195501 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXA04_RS05890	nlpD	1195686..1196780 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EXA04_RS05895	rpoS	1196843..1197835 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXA04_RS05900	-	1197956..1198363 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
EXA04_RS05905	-	1198510..1199103 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EXA04_RS05910	-	1199103..1200530 (+)	1428	WP_000863224.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EXA04_RS05915	-	1200541..1200777 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EXA04_RS05920	ygbN	1200817..1202181 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305462 EXA04_RS05895 WP_000081550.1 1196843..1197835(+) (rpoS) [Escherichia coli strain 025542-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305462 EXA04_RS05895 WP_000081550.1 1196843..1197835(+) (rpoS) [Escherichia coli strain 025542-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715