Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA04_RS00380 Genome accession   NZ_CP035832
Coordinates   70644..71120 (-) Length   158 a.a.
NCBI ID   WP_001186201.1    Uniprot ID   -
Organism   Escherichia coli strain 025542-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65644..76120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA04_RS00340 setC 65755..66939 (-) 1185 WP_216317210.1 sugar efflux transporter -
  EXA04_RS00345 rhuM 67369..67497 (-) 129 Protein_67 RhuM family protein -
  EXA04_RS00350 - 67735..68577 (-) 843 WP_001274548.1 DUF4942 domain-containing protein -
  EXA04_RS00355 - 68662..68859 (-) 198 WP_000772035.1 DUF957 domain-containing protein -
  EXA04_RS00360 - 68871..69362 (-) 492 WP_000976825.1 DUF5983 family protein -
  EXA04_RS00365 - 69359..69733 (-) 375 WP_000854775.1 TA system toxin CbtA family protein -
  EXA04_RS00370 - 69823..70191 (-) 369 WP_001285645.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA04_RS00375 - 70354..70575 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  EXA04_RS00380 radC 70644..71120 (-) 477 WP_001186201.1 RadC family protein Machinery gene
  EXA04_RS00385 - 71136..71621 (-) 486 WP_000213721.1 antirestriction protein -
  EXA04_RS00390 - 71713..72531 (-) 819 WP_001175173.1 DUF932 domain-containing protein -
  EXA04_RS00395 - 72621..72854 (-) 234 WP_001278284.1 DUF905 family protein -
  EXA04_RS00400 - 72860..73537 (-) 678 WP_001097566.1 hypothetical protein -
  EXA04_RS00405 - 73688..74368 (-) 681 WP_001282911.1 YafY family protein -
  EXA04_RS00410 - 74571..75455 (-) 885 WP_000010385.1 GTPase family protein -
  EXA04_RS00415 - 75449..75643 (+) 195 WP_001304548.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.24 Da        Isoelectric Point: 6.9859

>NTDB_id=305441 EXA04_RS00380 WP_001186201.1 70644..71120(-) (radC) [Escherichia coli strain 025542-1]
MQQISFLSGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305441 EXA04_RS00380 WP_001186201.1 70644..71120(-) (radC) [Escherichia coli strain 025542-1]
ATGCAACAGATTTCCTTTCTGTCCGGAGAGATGACACCCGGTGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCTCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGTCAGGTTTTCTCCTTTGCCGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment