Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EXA05_RS19015 Genome accession   NZ_CP035826
Coordinates   3947159..3947788 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 67-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3942159..3952788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA05_RS18995 ycbZ 3942560..3944320 (-) 1761 WP_000156518.1 Lon protease family protein -
  EXA05_RS19000 matP 3944506..3944958 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EXA05_RS19005 ompA 3945034..3946074 (-) 1041 WP_000750416.1 porin OmpA -
  EXA05_RS19010 sulA 3946431..3946940 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EXA05_RS19015 sxy/tfoX 3947159..3947788 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EXA05_RS19020 yccS 3947751..3949913 (-) 2163 WP_000875061.1 YccS family putative transporter -
  EXA05_RS19025 yccF 3949923..3950369 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EXA05_RS19030 helD 3950492..3952546 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=305429 EXA05_RS19015 WP_000839153.1 3947159..3947788(+) (sxy/tfoX) [Escherichia coli strain 67-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305429 EXA05_RS19015 WP_000839153.1 3947159..3947788(+) (sxy/tfoX) [Escherichia coli strain 67-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1