Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXA05_RS16585 Genome accession   NZ_CP035826
Coordinates   3427518..3428123 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 67-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3422518..3433123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA05_RS26930 - 3423072..3423170 (+) 99 Protein_3237 hypothetical protein -
  EXA05_RS16555 rsmS 3423223..3423384 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXA05_RS16560 priC 3423398..3423925 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  EXA05_RS16565 ybaN 3423995..3424372 (+) 378 WP_001188905.1 DUF454 family protein -
  EXA05_RS16570 apt 3424525..3425076 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXA05_RS16575 dnaX 3425205..3427136 (+) 1932 WP_000122049.1 DNA polymerase III subunit gamma/tau -
  EXA05_RS16580 ybaB 3427189..3427518 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXA05_RS16585 recR 3427518..3428123 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXA05_RS16590 htpG 3428233..3430107 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EXA05_RS16595 adk 3430288..3430932 (+) 645 WP_001220233.1 adenylate kinase -
  EXA05_RS16600 hemH 3431064..3432026 (+) 963 WP_097343510.1 ferrochelatase -
  EXA05_RS16605 aes 3432001..3432969 (-) 969 WP_000801858.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305422 EXA05_RS16585 WP_001195025.1 3427518..3428123(+) (recR) [Escherichia coli strain 67-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305422 EXA05_RS16585 WP_001195025.1 3427518..3428123(+) (recR) [Escherichia coli strain 67-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCTGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443