Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DWB95_RS04095 Genome accession   NZ_CP031280
Coordinates   858193..858909 (-) Length   238 a.a.
NCBI ID   WP_154874239.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain 3C     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 853193..863909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB95_RS04080 (DWB95_04095) - 854611..855561 (+) 951 WP_046467596.1 LacI family DNA-binding transcriptional regulator -
  DWB95_RS04085 (DWB95_04100) - 855681..857165 (+) 1485 WP_126568134.1 sucrose-6-phosphate hydrolase -
  DWB95_RS04090 (DWB95_04105) - 857162..858121 (+) 960 WP_154874237.1 carbohydrate kinase -
  DWB95_RS04095 (DWB95_04110) agrA 858193..858909 (-) 717 WP_154874239.1 LytTR family DNA-binding domain-containing protein Regulator
  DWB95_RS04100 (DWB95_04115) - 858922..860211 (-) 1290 WP_029056064.1 GHKL domain-containing protein -
  DWB95_RS04105 (DWB95_04120) - 860236..860376 (-) 141 WP_126568052.1 cyclic lactone autoinducer peptide -
  DWB95_RS04110 (DWB95_04125) - 860381..860944 (-) 564 WP_119623148.1 accessory gene regulator AgrB -
  DWB95_RS04115 (DWB95_04130) - 861262..861339 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  DWB95_RS04120 (DWB95_04135) - 861404..861481 (+) 78 WP_072291871.1 delta-lysin family phenol-soluble modulin -
  DWB95_RS04125 (DWB95_04140) - 861878..862663 (-) 786 WP_126568055.1 carbon-nitrogen family hydrolase -
  DWB95_RS04130 (DWB95_04145) - 862778..863404 (-) 627 WP_126568058.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27927.99 Da        Isoelectric Point: 6.1643

>NTDB_id=305413 DWB95_RS04095 WP_154874239.1 858193..858909(-) (agrA) [Staphylococcus pasteuri strain 3C]
MKIFICEDDPKQRENMTSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRRNIESIDSKKRIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=305413 DWB95_RS04095 WP_154874239.1 858193..858909(-) (agrA) [Staphylococcus pasteuri strain 3C]
ATGAAAATTTTCATTTGCGAAGATGATCCAAAACAAAGAGAGAATATGACTTCAATTATTAAAAATTATATCATGATTGA
GGAAAAACCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATCG
GTTGTTATTTCTTAGATATCCAACTCGAAGCAGATATTAATGGTATTAAATTAGGTAGTGAAATTCGCAAACATGATCCT
GTCGGCAATATTATCTTTGTTACAAGTCATAGCGAACTAACATACCTCACCTTTGTATATAAAGTGGCAGCGATGGATTT
CATATTTAAAGATGACCCAGCAGAACTGAAAACACGAATTATTGATTGTTTAGAAACCGCTCACACAAGACTTAAGTTAT
TATCAAAAGAAAGTAATGTTGAAACAATCGAATTAAAACGTGGAAGTAATTCAGTGTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGCAAATCACATCGTTTAATCGCCCATTTAGATAATAGACAAATCGAATTTTATGGTAATCTTAA
AGAATTAAGTCAATTAGATGACCGCTTCTTTAGGTGCCACAATAGTTTTGTAGTTAATCGAAGAAACATAGAATCAATTG
ATTCAAAAAAACGTATTGTCTATTTCAAAAACAAAGAACATTGTTATGCATCTGTTCGAAATGTTAAAAAAATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.277

100

0.933

Multiple sequence alignment