Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DWB94_RS10045 Genome accession   NZ_CP031277
Coordinates   2036344..2037717 (-) Length   457 a.a.
NCBI ID   WP_049379506.1    Uniprot ID   -
Organism   Staphylococcus hominis strain 19A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2031344..2042717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB94_RS10030 (DWB94_10030) cysE 2032502..2033161 (-) 660 WP_172473782.1 serine O-acetyltransferase -
  DWB94_RS10035 (DWB94_10035) gltX 2033516..2034970 (-) 1455 WP_048681736.1 glutamate--tRNA ligase -
  DWB94_RS10040 (DWB94_10040) - 2035248..2036321 (-) 1074 WP_049379507.1 PIN/TRAM domain-containing protein -
  DWB94_RS10045 (DWB94_10045) radA 2036344..2037717 (-) 1374 WP_049379506.1 DNA repair protein RadA Machinery gene
  DWB94_RS10050 (DWB94_10050) - 2037851..2040322 (-) 2472 WP_017175303.1 ATP-dependent Clp protease ATP-binding subunit -
  DWB94_RS10055 (DWB94_10055) - 2040338..2041345 (-) 1008 WP_072291569.1 protein arginine kinase -
  DWB94_RS10060 (DWB94_10060) - 2041338..2041901 (-) 564 WP_017175301.1 UvrB/UvrC motif-containing protein -
  DWB94_RS10065 (DWB94_10065) - 2041933..2042394 (-) 462 WP_002449017.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50363.71 Da        Isoelectric Point: 7.2138

>NTDB_id=305401 DWB94_RS10045 WP_049379506.1 2036344..2037717(-) (radA) [Staphylococcus hominis strain 19A]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKAKETQAKVQKLNSIKHEATPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSNNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGVQVVGVTTVHDALKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=305401 DWB94_RS10045 WP_049379506.1 2036344..2037717(-) (radA) [Staphylococcus hominis strain 19A]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCGAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAGCATGGCGTAAAGGCAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGGCAACACCGAGAGTTCAAACGGATTCTAAAGAATTTAATCGTGTA
CTTGGTGGCGGAATTGTTAGTGGATCACTCGTACTGATTGGCGGCGACCCAGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTTCTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAATAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGACTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGATTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTAAAAGGGGTACAAAACCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TTGCTACTATGGAAGGCACACGACCATTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGCTTGCTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCAGGTGGAGTGAGACTTACTGAACCAGCTGTGGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCTGTAGATGGTTTGGATTGTTATATTGGTGAAGTAGGATTAACTGGTGAGGTAAGA
CGAGTATCGCGTATCGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCTCAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAAGTCGTTGGTGTGACAACGGTACATGATGCTTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.781

0.652
  radA Streptococcus pneumoniae Rx1

58.94

99.125

0.584
  radA Streptococcus pneumoniae D39

58.94

99.125

0.584
  radA Streptococcus pneumoniae R6

58.94

99.125

0.584
  radA Streptococcus pneumoniae TIGR4

58.94

99.125

0.584
  radA Streptococcus mitis NCTC 12261

58.94

99.125

0.584
  radA Streptococcus mitis SK321

58.94

99.125

0.584

Multiple sequence alignment