Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCD_RS13880 Genome accession   NC_012668
Coordinates   2977898..2978395 (-) Length   165 a.a.
NCBI ID   WP_000797297.1    Uniprot ID   G9IDC2
Organism   Vibrio cholerae MJ-1236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2972898..2983395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS13845 - 2973279..2973689 (+) 411 WP_000592337.1 helix-turn-helix domain-containing protein -
  VCD_RS13850 (VCD_003672) - 2973826..2974122 (+) 297 WP_001919795.1 DUF1801 domain-containing protein -
  VCD_RS13855 (VCD_003673) - 2974222..2974923 (+) 702 WP_001901434.1 helix-turn-helix domain-containing protein -
  VCD_RS20175 - 2974920..2975324 (-) 405 WP_000023760.1 VOC family protein -
  VCD_RS13865 (VCD_003674) - 2975596..2976303 (-) 708 WP_000989526.1 hypothetical protein -
  VCD_RS13870 (VCD_003675) - 2976393..2977466 (-) 1074 WP_001207590.1 primase-helicase zinc-binding domain-containing protein -
  VCD_RS13875 (VCD_003676) - 2977557..2977898 (-) 342 WP_001081787.1 hypothetical protein -
  VCD_RS13880 (VCD_003677) radC 2977898..2978395 (-) 498 WP_000797297.1 RadC family protein Machinery gene
  VCD_RS13885 (VCD_003678) - 2978480..2980135 (-) 1656 WP_001016320.1 nitric oxide reductase activation protein NorD -
  VCD_RS13890 (VCD_003679) - 2980205..2980645 (-) 441 WP_001192023.1 hypothetical protein -
  VCD_RS13895 (VCD_003680) - 2980707..2981660 (-) 954 WP_000027441.1 DUF3150 domain-containing protein -
  VCD_RS13900 (VCD_003681) - 2981759..2982526 (-) 768 WP_000970191.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18510.16 Da        Isoelectric Point: 6.6092

>NTDB_id=30538 VCD_RS13880 WP_000797297.1 2977898..2978395(-) (radC) [Vibrio cholerae MJ-1236]
MKNRKFLAGEDAGTYIVPEQVTEADILDLALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNAAAVILVHNHPSGDPEPSEADKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=30538 VCD_RS13880 WP_000797297.1 2977898..2978395(-) (radC) [Vibrio cholerae MJ-1236]
ATGAAAAACAGAAAGTTCTTAGCTGGCGAAGATGCCGGTACTTATATCGTTCCTGAGCAAGTGACTGAAGCGGATATCTT
AGATCTGGCGCTTAAGCTTGCCCGTGGTCGATTAAGTAAAGGTCGCAAAATTGAACAGCCATCGTCGGCGTTCTCATACC
TGCAAACACTGATGCACGAGTATGAGCACGAGGTTTTTGGTGTGCTGTTTCTTGATACAAAGCATCGCGTCATTCGATTT
GAAGAGCTGTTCAAAGGCACTTTAGATGCGGCGAGCGTGTATCCAAGGGAAGTAACAAAACGAGCGCTAGAACTTAATGC
GGCAGCAGTGATACTGGTTCATAACCATCCATCGGGTGATCCTGAACCCAGTGAAGCTGATAAACGCATTACTCATCGAC
TTCGTGACGCCTTGTCACTTGTTGATATTCGAACGCTTGACCATGTCGTGGTCGCATCCGAGGGCTGCGTTTCGCTTGCC
GAACGCGGTTATCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9IDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

73.939

0.37

Multiple sequence alignment