Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXA05_RS04110 Genome accession   NZ_CP035826
Coordinates   864307..864822 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 67-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 859307..869822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA05_RS04085 ygaZ 859706..860443 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EXA05_RS04090 ygaH 860433..860768 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  EXA05_RS04095 emrR 860859..861389 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXA05_RS04100 emrA 861516..862688 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXA05_RS04105 emrB 862705..864243 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXA05_RS04110 luxS 864307..864822 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EXA05_RS04115 gshA 864972..866528 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EXA05_RS04120 yqaA 866601..867029 (-) 429 WP_001287454.1 YqaA family protein -
  EXA05_RS04125 yqaB 867026..867592 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXA05_RS04155 csrA 869050..869235 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=305366 EXA05_RS04110 WP_001130211.1 864307..864822(-) (luxS) [Escherichia coli strain 67-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305366 EXA05_RS04110 WP_001130211.1 864307..864822(-) (luxS) [Escherichia coli strain 67-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731