Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DWB98_RS04570 Genome accession   NZ_CP031275
Coordinates   987851..988567 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982851..993567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB98_RS04545 (DWB98_04555) - 983521..983745 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  DWB98_RS04555 (DWB98_04565) - 984323..985285 (+) 963 WP_069794673.1 LacI family DNA-binding transcriptional regulator -
  DWB98_RS04560 (DWB98_04570) - 985369..986853 (+) 1485 WP_107542974.1 sucrose-6-phosphate hydrolase -
  DWB98_RS04565 (DWB98_04575) - 986850..987815 (+) 966 WP_107542975.1 carbohydrate kinase -
  DWB98_RS04570 (DWB98_04580) agrA 987851..988567 (-) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  DWB98_RS04575 (DWB98_04585) agrC 988580..989875 (-) 1296 WP_069795726.1 quorum-sensing sensor histidine kinase AgrC -
  DWB98_RS04580 (DWB98_04590) agrD 989905..990042 (-) 138 WP_069795725.1 cyclic lactone autoinducer peptide AgrD -
  DWB98_RS04585 (DWB98_04595) - 990045..990614 (-) 570 WP_069795724.1 accessory gene regulator AgrB -
  DWB98_RS04590 (DWB98_04600) - 991380..992165 (-) 786 WP_047172118.1 carbon-nitrogen family hydrolase -
  DWB98_RS04595 (DWB98_04605) - 992530..993159 (-) 630 WP_069795723.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=305346 DWB98_RS04570 WP_029378924.1 987851..988567(-) (agrA) [Staphylococcus xylosus strain]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=305346 DWB98_RS04570 WP_029378924.1 987851..988567(-) (agrA) [Staphylococcus xylosus strain]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTCTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGAATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGACTAAAACTAC
TTTCAAAAGAAAGCAGCGTCGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGCTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGTGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAACGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849

Multiple sequence alignment