Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DWB98_RS04285 Genome accession   NZ_CP031275
Coordinates   929796..930215 (+) Length   139 a.a.
NCBI ID   WP_042362323.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 924796..935215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB98_RS04255 (DWB98_04265) atpD 924836..926248 (+) 1413 WP_042362320.1 F0F1 ATP synthase subunit beta -
  DWB98_RS04260 (DWB98_04270) - 926268..926672 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  DWB98_RS04265 (DWB98_04275) - 927014..927247 (+) 234 WP_042362321.1 DUF1146 family protein -
  DWB98_RS04270 (DWB98_04280) murA 927354..928619 (+) 1266 WP_042362322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DWB98_RS04275 (DWB98_04285) fabZ 928677..929114 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DWB98_RS04280 (DWB98_04290) - 929165..929605 (-) 441 WP_017722099.1 YwpF-like family protein -
  DWB98_RS04285 (DWB98_04295) ssb 929796..930215 (+) 420 WP_042362323.1 single-stranded DNA-binding protein Machinery gene
  DWB98_RS04290 (DWB98_04300) - 930642..931337 (+) 696 WP_042362324.1 transglycosylase family protein -
  DWB98_RS04295 (DWB98_04305) tenA 931777..932457 (+) 681 WP_042362325.1 thiaminase II -
  DWB98_RS04300 (DWB98_04310) thiD 932459..933280 (+) 822 WP_047172091.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DWB98_RS04305 (DWB98_04315) thiM 933273..934061 (+) 789 WP_047172092.1 hydroxyethylthiazole kinase -
  DWB98_RS04310 (DWB98_04320) thiE 934064..934702 (+) 639 WP_047172093.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16190.60 Da        Isoelectric Point: 6.4617

>NTDB_id=305345 DWB98_RS04285 WP_042362323.1 929796..930215(+) (ssb) [Staphylococcus xylosus strain]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=305345 DWB98_RS04285 WP_042362323.1 929796..930215(+) (ssb) [Staphylococcus xylosus strain]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

65.421

76.978

0.504
  ssb Staphylococcus aureus MW2

64.486

76.978

0.496

Multiple sequence alignment