Detailed information NTG0305306

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXA06_RS11615
• Genome accession: NZ_CP035822
• Coordinates: 2376430..2377422 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WS4437A-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2371430..2382422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXA06_RS11595	otnK	2372205..2373467 (+)	1263	WP_001737442.1	3-oxo-tetronate kinase	-
EXA06_RS11600	ygbL	2373464..2374102 (+)	639	WP_001278994.1	aldolase	-
EXA06_RS11605	ygbM	2374107..2374883 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
EXA06_RS11610	ygbN	2374972..2376336 (+)	1365	WP_000104459.1	GntP family transporter	-
EXA06_RS11615	rpoS	2376430..2377422 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXA06_RS11620	nlpD	2377485..2378579 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EXA06_RS11625	pcm	2378764..2379390 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXA06_RS11630	surE	2379384..2380145 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EXA06_RS11635	truD	2380126..2381175 (-)	1050	WP_216350072.1	tRNA pseudouridine(13) synthase TruD	-
EXA06_RS11640	ispF	2381172..2381651 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXA06_RS11645	ispD	2381651..2382361 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305306 EXA06_RS11615 WP_000081550.1 2376430..2377422(-) (rpoS) [Escherichia coli strain WS4437A-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305306 EXA06_RS11615 WP_000081550.1 2376430..2377422(-) (rpoS) [Escherichia coli strain WS4437A-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715