Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EXA06_RS07905 Genome accession   NZ_CP035822
Coordinates   1579517..1580944 (+) Length   475 a.a.
NCBI ID   WP_001737301.1    Uniprot ID   -
Organism   Escherichia coli strain WS4437A-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1574517..1585944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA06_RS07865 yeeW 1574700..1574894 (+) 195 WP_000988600.1 DUF5983 family protein -
  EXA06_RS07870 - 1574940..1575020 (+) 81 Protein_1550 hypothetical protein -
  EXA06_RS07875 - 1575309..1575437 (-) 129 Protein_1551 transposase domain-containing protein -
  EXA06_RS07880 - 1575509..1575691 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EXA06_RS07885 tmaR 1575792..1576121 (-) 330 WP_000450409.1 DUF496 family protein -
  EXA06_RS07890 yeeA 1576293..1577351 (-) 1059 WP_001200891.1 FUSC family protein -
  EXA06_RS07895 sbmC 1577550..1578023 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  EXA06_RS07900 dacD 1578142..1579308 (-) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EXA06_RS07905 sbcB 1579517..1580944 (+) 1428 WP_001737301.1 exodeoxyribonuclease I Machinery gene
  EXA06_RS07910 tsuB 1580987..1581214 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EXA06_RS07915 tsuA 1581228..1582286 (-) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  EXA06_RS07925 plaP 1583242..1584600 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EXA06_RS07930 yoeI 1584590..1584652 (-) 63 WP_010723108.1 membrane protein YoeI -
  EXA06_RS07935 yeeY 1584867..1585796 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.87 Da        Isoelectric Point: 5.4740

>NTDB_id=305293 EXA06_RS07905 WP_001737301.1 1579517..1580944(+) (sbcB) [Escherichia coli strain WS4437A-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=305293 EXA06_RS07905 WP_001737301.1 1579517..1580944(+) (sbcB) [Escherichia coli strain WS4437A-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.085

98.947

0.575