Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EXA06_RS02465 Genome accession   NZ_CP035822
Coordinates   499243..499872 (+) Length   209 a.a.
NCBI ID   WP_001737942.1    Uniprot ID   -
Organism   Escherichia coli strain WS4437A-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 494243..504872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA06_RS02445 ycbZ 494644..496404 (-) 1761 WP_000156518.1 Lon protease family protein -
  EXA06_RS02450 matP 496590..497042 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EXA06_RS02455 ompA 497118..498158 (-) 1041 WP_000750416.1 porin OmpA -
  EXA06_RS02460 sulA 498515..499024 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EXA06_RS02465 sxy/tfoX 499243..499872 (+) 630 WP_001737942.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EXA06_RS02470 yccS 499835..501997 (-) 2163 WP_000875061.1 YccS family putative transporter -
  EXA06_RS02475 yccF 502007..502453 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EXA06_RS02480 helD 502576..504630 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 8.9883

>NTDB_id=305280 EXA06_RS02465 WP_001737942.1 499243..499872(+) (sxy/tfoX) [Escherichia coli strain WS4437A-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTWERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305280 EXA06_RS02465 WP_001737942.1 499243..499872(+) (sxy/tfoX) [Escherichia coli strain WS4437A-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCTGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995