Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXA07_RS19405 Genome accession   NZ_CP035819
Coordinates   4048217..4048822 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WS3294A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4043217..4053822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA07_RS25875 - 4043771..4043869 (+) 99 Protein_3797 hypothetical protein -
  EXA07_RS19375 rsmS 4043922..4044083 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXA07_RS19380 priC 4044097..4044624 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  EXA07_RS19385 ybaN 4044694..4045071 (+) 378 WP_001188905.1 DUF454 family protein -
  EXA07_RS19390 apt 4045224..4045775 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXA07_RS19395 dnaX 4045904..4047835 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  EXA07_RS19400 ybaB 4047888..4048217 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXA07_RS19405 recR 4048217..4048822 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXA07_RS19410 htpG 4048932..4050806 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  EXA07_RS19415 adk 4050987..4051631 (+) 645 WP_001220233.1 adenylate kinase -
  EXA07_RS19420 hemH 4051867..4052829 (+) 963 WP_001250088.1 ferrochelatase -
  EXA07_RS19425 aes 4052826..4053737 (-) 912 WP_216350855.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305263 EXA07_RS19405 WP_001195025.1 4048217..4048822(+) (recR) [Escherichia coli strain WS3294A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305263 EXA07_RS19405 WP_001195025.1 4048217..4048822(+) (recR) [Escherichia coli strain WS3294A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443